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PUBLICATIONS

 

Book Chapters

A. V. Ratushny, S. A. Ramsey, J. D. Aitchison. Mathematical modeling of biomolecular network dynamics. Gerard Cagney and Andrew Emili (eds.), Network Biology: Methods and Applications, Methods in Molecular Biology, Springer Science+Business Media, LLC, 2011, vol. 781, p. 415-433.

Likhoshvai V.A., Ratushny A.V., Bazhan S.I., Fadeev S.I., Kolchanov N.A. Modeling methods of dynamics of molecular genetic systems. Computational systems biology, in eds. N.A. Kolchanov, S.S. Goncharov, V.A. Likhoshvai and V.A. Ivanisenko. SB RAS Press, Novosibirsk, 2008, p. 333-393.

Ratushny A.V., Ignatieva E.V., Likhoshvai V.A. Computer Dynamic Modeling of the Gene Network Controlling Intracellular Cholesterol Homeostasis In: Bioinformatics of genome regulation and structure. Ed. by N. Kolchanov and R. Hofestaedt, Kluwer Academic Publishers, Boston/Dordrecht/ London, 2004, pp. 293-300.

Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvani, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, and Yuri G. Matushkin. Gene Networks Description and Modeling in the GeneNet System, in eds. Julio Collado-Vides and Ralf Hofestadt, "Gene Regulation and Metabolism", The MIT Press, Cambridge, Massachusetts, 2002.

Ratushny A.V., Lihoshvai V.A., Ignatieva E.V., Matushkin U.G., Kolchanov N.A. Computer Modeling of gene Network: the Action of Mutations. In: Molecular Genetics, Biophysics, and Medicine To-day (Bresler Memorial Lectures)/ ed. V.A. Lanzov, PNPI Press, ST.Petersburg / Gatchina, 2002, pp.169-184.

 

Peer-Reviewed Articles

Litvak V, Ratushny AV, Lampano AE, Schmitz F, Huang AC, Raman A, Rust AG, Bergthaler A, Aitchison JD, Aderem A. A FOXO3-IRF7 gene regulatory circuit limits inflammatory sequelae of antiviral responses. Nature. 2012 Sep 16. doi: 10.1038/nature11428.

Ratushny A.V., Saleem R.A., Sitko K., Ramsey S.A., Aitchison J.D. Asymmetric positive feedback loops reliably control biological responses. Nature Mol Syst Biol. 2012 Apr 24; 8:577.

DuBois K.N., Alsford S., Holden J.M., Buisson J., Swiderski M., Bart J., Ratushny A.V., Wan Y., Bastin P., Barry J.D., Navarro M., Horn D., Aitchison J.D., Rout M.P. and Field M.C. NUP-1 is a large coiled-coil nucleoskeletal protein in trypanosomes with lamina-like functions. PLoS Biol. 2012 Mar;10(3):e1001287.

Ratushny A.V., Ramsey S.A., Aitchison .JD. Mathematical modeling of biomolecular network dynamics. Methods Mol Biol. 2011;781:415-33.

Ratushny A.V., Shmulevich I., Aitchison J.D. Trade-off between responsiveness and noise suppression in biomolecular system responses to environmental cues. PLoS Comput Biol. 7(6): e1002091. doi:10.1371/journal.pcbi.1002091. Featured in PLoS Comp Bio June issue.

Saleem RA, Rogers RS*, Ratushny AV*, Dilworth DJ, Shannon PT, Shteynberg D, Moritz RL, Nesvizhskii AI, Rachubinski RA, Aitchison JD. Integrated phosphoproteomic analysis of a signaling network governing nutrient response and peroxisome induction. Mol Cell Proteomics. 2010 Sep;9(9):2076-88. Epub 2010 Apr 15.

Wan Y., Saleem R.A., Ratushny A.V., Roda O., Smith J.J., Lin C.H., Chiang J.H., Aitchison J.D. Role of the histone variant H2A.Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes. Mol Cell Biol. 2009 May;29(9):2346-58. Epub 2009 Mar 9.

Ratushny A.V., Ramsey S.A., Roda O., Wan Y., Smith J.J., Aitchison J.D. Control of transcriptional variability by overlapping feed-forward regulatory motifs. Biophys J. 2008 Oct;95(8):3715-23. Epub 2008 Jul 11.

Likhoshvai V.A., Ratushny A.V. Generalized Hill function method for modeling molecular processes. J Bioinform Comput Biol. 2007 Apr;5(2b):521-31.

Mishchenko E.L., Bezmaternikh K.D., Likhoshvai V.A., Ratushny A.V., Khlebodarova N.M., Ivanisenko V.A., Kolchanov N.A. Mathematical model for suppression of subgenomic hepatitis C virus RNA replication in cell culture. J Bioinform Comput Biol. 2007 Apr;5(2b):593-609.

Bezmaternykh K.D., Mishchenko E.L., Ratushny A.V., Likhoshvai V.A., Khlebodarova T.M., Ivanisenko V.A. Mathematical Modeling of the Reproduction of the Hepatitis C Virus Replicon in Cell Culture. Simulation of the Action of Potential Therapeutics // Biophysics, 2006, Vol. 51, Suppl. 1, p. 70-74.

Ratushny A.V. and Likhoshvai V.A. Mathematical Modeling of Intracellular Membrane Transport: Receptor-Mediated Endocytosis and Degradation of Low-Density Lipoproteins // Biophysics, 2006, Vol. 51, Suppl. 1, p. 95-99. (PDF)

Ananko EA, Podkolodny NL, Stepanenko IL, Podkolodnaya OA, Rasskazov DA, Miginsky DS, Likhoshvai VA, Ratushny AV, Podkolodnaya NN, Kolchanov NA. GeneNet in 2005. Nucleic Acids Res. 2005 Jan 1;33 Database Issue:D425-7.

A.V. Ratushny, V.A. Likhoshvai, E.A. Anan'ko, N.V. Vladimirov, K.V. Gunbin, S.A. Lashin, E.A. Nedosekina, S.V. Nikolaev, L.V. Omel'yanchuk, Yu.G. Matushkin, N.A. Kolchanov. Novosibirsk school of computational systems biology: history and future trends. Informatsionnyi vestnik VOGiS, 2005, 9(2), pp. 232-261.

Kolchanov NA, Podkolodnaia OA, Anan'ko EA, Afonnikov DA, Vishnevskii OV, Vorob'ev DG, Ignat'eva EV, Levitskii VG, Likhoshvai VA, Omel'ianchuk NA, Ratushny AV, Podkolodny NL. Integrated computer system for regulating eukaryotic gene expression. Mol Biol (Mosk). 2004 Jan-Feb;38(1):69-81.

Kolchanov N.A., Latypov A.F., Lihoshvaj V.A., Matushkin Yu.G., Nikulichev Yu.V., Ratushnyi A.V. (2004) Optimal Control Problems in Gene Network Dynamics and the Methods for Solving Them. Journal of Computer and System Sciences International, Vol. 43, No. 6, pp. 862-72.

Golubyatnikov V., Likhoshvai V., Ratushny A. Existence of Closed Trajectories in 3-D Gene Networks: The journal of three dimensional images 3D forum. Vol. 18, N. 4, 2004.12, p. 96-101.

Ratushny AV, Likhoshvai VA, Ignatieva EV, Goryanin II, Kolchanov NA. Resilience of Cholesterol Concentration to a Wide Range of Mutations in the Cell. Complexus, 2003;1:142-148.

Ratushnyi AV, Likhoshvai VA, Ignat'eva EV, Matushkin YG, Goryanin II, Kolchanov NA. A computer model of the gene network of the cholesterol biosynthesis regulation in the cell: analysis of the effect of mutations. Dokl Biochem Biophys. 2003 Mar-Apr;389:90-3.

N.G. Zagoruiko, N.A. Kolchanov, A.G. Pichueva, O.A. Kutnenko, I.A. Borisova, A.V. Kochetov, V.A. Ivanisenko, S.V. Nikolaev, V.A. Likhoshvai, and A.V. Ratushnyi. Data Mining Techniques in Bioinformatics. Pattern Recognition and Image Analysis, Vol. 13, No. 4, 2003, pp. 550-555.

Kolchanov N.A. Nedosekina E.A., Ananko E.A., Likhoshvai V.A., Podkolodny N.L., Ratushny A.V., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Matushkin Yu.G. GeneNet Database: Description and modeling of Gene Networks. In Silico Biology 2 (2002), pp. 97-110.

Likhoshvai V.A., Matushkin Iu.G., Ratushnyi A.V., Anan'ko E.A., Ignat'eva E.V., Podkolodnaia O.A. A generalized chemical-kinetic method for modeling gene networks. Mol. Biol. (Mosk), 2001, Nov-Dec;35(6): 1072-9.

 

Peer-Reviewed Conference Publications

Likhoshvai V.A., Ratushny A.V. (2006) In silico cell I. Hierarchical approach and generalized Hill functions in modeling enzymatic reactions and gene expression regulation. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 13-18.

Ratushny A.V., Usuda Y., Matsui K., Podkolodnaya O.A. (2006) Mathematical modeling of elementary processes of the gene network controlling histidine biosynthesis in Escherichia coli. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 25-29.

Ratushny A.V., Nedosekina E.A. (2006) Regulation of pyrimidine biosynthesis in escherichia coli: gene network reconstruction and mathematical modeling. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 35-39.

Ratushny A.V., Smirnova O.G., Usuda Y., Matsui K. (2006) Regulation of the pentose phosphate pathway in Escherichia coli: gene network reconstruction and mathematical modeling of metabolic reactions. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 40-44.

Ananko E.A., Ratushny A.V., Usuda Y., Matsui K. (2006) Aromatic amino acid biosynthesis in Escherichia coli: generalized Hill function model of the tryptophan-sensitive 3-deoxy-d-arabinoheptulosonate-7-phosphate synthase reaction demonstrate complicated mechanism. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 45-48.

Ratushny A.V., Khlebodarova T.M. (2006) Mathematical modeling of regulation of cyоABCDE operon expression in Escherichia coli. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 49-54.

Smirnova O.G., Ratushny A.V. (2006) Gene network reconstruction and mathematical modeling of salvage pathways: regulation of adenine phosphoribosyltransferase activity by structurally similar substrates. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 73-77.

Ratushny A.V. (2006) Mathematical modeling of receptor mediated endocytosis of low-density lipoproteins and their degradation in lysosomes. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 151-155.

Ratushny A.V., Bezmaternikh K.D. (2006) Conserved properties of enzymatic systems: prenyltransferase kinetics. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 156-159.

Ratushny A.V. (2006) Mathematical modeling of the gene network controlling homeostasis of intracellular cholesterol. Proc. of the 5th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 160-164.

Fadeev S.I., Gainova I.A., Berezin A.Yu., Ratushny A.V., Matushkin Yu.G., Likhoshvai V.A. (2004) Determination of Stationary Solutions in Gene Network Models by Homotopy Method. Proc. of the 4th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, 29-34.

Golubyatnikov V.P., Likhoshvai V.A., Ratushny A.V. Oscillatory gene networks modeling and Hopf bifurcation. Proceedings of the 7-th International Conference Human and Computer (HC-2004), September 1-3, 2004, University of Aizu, Japan, 2004, pp.72-77.

Golubyatnikov V.P., Likhoshvai V.A., Fadeev S.I., Matushkin Yu.G., Ratushny A.V., Kolchanov N.A. Mathematical and Computer modeling of genetic networks. Proceedings of the 6-th International Conference Human and Computer (HC-2003), August 28-30, 2003, University of Aizu, Japan, 2003, pp.200-205

Ratushny A.V., Likhoshvai V.A. (2002) Computer analysis of the effects of mutations in LDL receptor gene on the regulation of cholesterol biosynthesis in the cell. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 150-153.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. (2002) Analysis of mutational portraits of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 157-159.

Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A. (2002) Evolution of diploid gene network of cholesterol biosynthesis regulation in the cell. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 160-162.

Borisova I.A., Zagoruiko N.G., KolchanovN.A., Likhoshvai V.A., Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A. (2002) Diagnosticof mutations based on analysis of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 163-165.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. (2002) Problems of control of gene networks in space of stable states. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 195-198.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. (2002) A method of solving problems of optimal control in dynamics of gene networks. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 199-202.

Kolchanov N.A. Podkolodny N.L., Likhoshvai V.A., Loktev K.A., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Nedosekina E.A., Matushkin Yu.G., Ratushny A.V., Tkachev Yu.A., Borisova I.A., Zagoruiko N.G., Dobrynin A.A., Makarov L.I., Fadeev S.I., Gainova I.A., Latypov A. F., Nikulichev Yu.V. (2002) Computer systemic biology: informational and software tools for complex molecular biological systems. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 140-142.

Likhoshvai V.A., Latypov A.F., Nedosekina E.A., Ratushny A.V., Podkolodny N.L. (2002) Technology of using experimental data for verification of models of gene network operation dynamics. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 146-149.

Fadeev S.I., Berezin A.Yu., Gainova I.A., Kogai V.V., Ratushny A.V., Likhoshvai V.A. (2002) Development of the program software for mathematic modeling of the gene network dynamics. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 2, pp. 173-175.

Zagoruiko N.G., Pichueva A.G., Kutnenko O.A., Borisova I.A., Kochetov A.V., Ivanesenko V.A., Nikolaev S.V., Likhoshvai V.A., Ratushny A.V., Kolchanov N.A. (2002) Computer systemic biology: informational and software tools for complex molecular biological systems. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 3, pp. 204-207.

Kolchanov N.A. Podkolodny N.L., Ananko E.A., Ignatieva E.V., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Lavryushev S.V., Grigorovich D.A., Kochetov A.V., Orlova G.V., Titov I.I., Vishnevsky O.V., Orlov Yu.L., Ivanesenko V.A., Vorobiev D.G., Oshchepkov D.Yu., Omelyanchuk N. A., PozdnyakovM.A., afonnikov D.A., Matushkin Yu.G., Likhoshvai V.A., Ratushny A.V., Katokhin A.V., Turnaev I.I., Proskura A.L., Suslov V.V., Nedosekina E.A. (2002) GeneExpress-2002: an integrated system on gene expression regulation. Proc. of the 3rd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 3, pp. 232-234.

Ratushny A.V., Ignatieva E.V., Matushkin Yu.G., Likhoshvai V.A. (2000) Mathematical model of cholesterol biosynthesis regulation in the cell. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 199-202.

Ratushny A.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. (2000) Mathematical model of erythroid cell differentiation regulation. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 203-206.

Ignatieva E.V., Likhoshvai V.A., Ratushny A.V., Kosarev P.S. (2000) Knowledge base on molecular genetical foundations of lipid metabolism regulation: current state and perspective. Proc. of the 2nd Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, Vol. 1, pp. 54-57.

 

Conference Abstracts

Ratushny A.V., Ramsey S.A., Roda O., Smith J.J., Aitchison J.D. Experimental and theoretical analysis of fatty acid responsive gene regulatory network in yeast. Proc. of the 6th Intern. Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, p. 206.

Ratushny A.V., Ramsey S.A., Roda O., Smith J.J., Aitchison J.D. Modeling the dynamic behavior of an oleate-responsive gene regulatory network in Saccharomyces cerevisiae. Conference program. The Eighth International Conference on Systems Biology, October 1-6, 2007, Long Beach, California, USA, p. 90.

Bezmaternikh K.D., Mischenko E.L., Ratushny A.V., Likhoshvai V.A., Khlebodarova T.M., Ivanisenko V.A. Mathematical model for suppression of hepatitis C virus RNA replicon replication in cell culture. Proceeding of VII All-Russian conference of young scientists on mathematical modeling and informational technologies. November, 1-3, 2006, Krasnoyarsk, Russia, p. 38 (in Russian).

Kazantsev F.V., Podkolodnaya N.N., Akberdin I.R., Bezmaternikh K.D., Krokus I.V., Lashin S.A., Ratushny A.V., Likhoshvai V.A. MGSmodeller is a computer system for construction, calculation and analysis of molecular genetic system models. Proceeding of VII All-Russian conference of young scientists on mathematical modeling and informational technologies. November, 1-3, 2006, Krasnoyarsk, Russia, p. 84 (in Russian).

Ratushny A.V., Khlebodarova T.M., Likhoshvai V.A. Molecular-genetic mechanisms of E. coli respiration: gene network reconstruction and mathematical modeling. Materials of the 2nd All-Russian Conference "Infocommunication and Computing Technologies and Systems ", Ulan-Ude/Baikal lake, Russia, July 1-4, 2006, pp.113-114 (in Russian).

Ratushny A.V., Likhoshvai V.A. Mathematical modeling of gene network controlling cholesterol homeostasis in the cell. Materials of the 7th All-Russian School-Seminar of Junior Scientists on Mathematical Modeling and Informational Technologies, Irkutsk, Russia, 2006, pp. 152-154 (in Russian).

Ratushny A.V., Likhoshvai V.A., T.M. Khlebodarova, N.V. Apasyeva. Molecular-genetic mechanisms of prokaryotic cell respiration: gene network reconstruction and mathematical modeling. Proceedings of the International Moscow Conference on Computational Molecular Biology, Moscow, Russia, July 18-21, 2005, pp. 319-320.

Ratushny A.V., Likhoshvai V.A. (2005) Mathematical and computer modelling of molecular genetic network controlling intracellular cholesterol homeostasis. // 4th European Conference on Computational Biology (ECCB 2005), Programme and abstracts book, p. 114.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2004) Robustness of key components of homeostatic gene networks to a wide range of mutations. // The 12th International Conference on Intelligent Systems for Molecular Biology (ISMB 2004) and 3rd the European Conference on Computational Biology (ECCB 2004), Conference programme, p. 219.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2004) Robustness of homeostatic gene networks target products to a wide range of mutations and perturbations in the cell. // ISMB 2004 and ECCB 2004 Satellite Meeting, Special Interest Group in Simulations and Modelling, Book of abstracts, p. 29.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. Robustness of intracellular cholesterol content to a wide range of perturbations in the cell. // Abstracts from the FEBS Special Meeting: 45th International Conference on the Bioscience of Lipids - May 25-29, Ioannina, Greece, Chemistry and Physics of Lipids, 2004 130(1), p. 81.

Ratushny A.V., Likhoshvai V.A., Matushkin Y.G., Kolchanov N.A., Borisova I.A., Zagoruiko N. G. Computer analysis of mutations and evolution of gene networks. Proceedings of the International Moscow Conference on Computational Molecular Biology, Moscow, Russia, July 22-25, 2003, pp. 198-199.

Kolchanov N.A., Likhoshvai V.A., Ananko E.A., Stepanenko I.L., Podkolodnaya O.A., Ignatieva E.V., Ratushny A.V., Nedosekina E.A., Podkolodny N.L. GeneNet Discovery: Gene Networks Reconstruction, Analysis and Modeling. Proceedings of the International Moscow Conference on

Computational Molecular Biology, Moscow, Russia, July 22-25, 2003, pp. 109-111.

Ratushny A.V., Likhoshvai V.A., Borisova I.A., Zagoruiko N.G., Matushkin Y.G., Kolchanov N. A. Theoretical study of mutations and evolution of gene networks. Proceedings of the European Conference on Computational Biology in conjunction with the French National Conference on Bioinformatics (JOBIM 2003), Paris, France, September 27-30, 2003, pp. 579-580.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. Theoretical Study of Homeostatic and Developmental Gene Networks Dynamics. Proceedings of the International Conference on Pathways, Networks, and Systems: Theory and Experiments, September 28 - October 2, 2003 Santorini, Greece, p. 67.

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A. Computer dynamic modeling and theoretical investigation of homeostatic and developmental gene networks. Proceedings of the German Conference on Bioinformatics, October 12-14, 2003, Neuherberg/Garching near Munich.

Latypov A.F., Nikulichev Yu.V., Likhoshvai V.A., Ratushny A.V., Matushkin Yu.G., Kolchanov N.A. Problems of Control of Gene Networks in a Space of Stable States. Proc. IFAC Workshop "Modelling and Analysis of Logic Controlled Dynamic Systems ", Irkutsk, Russia, 2003, p.251-266

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Kolchanov N.A. (2002) Analysis of the influence of mutations in the gene network regulating cholesterol synthesis in the cell. // Abstracts from the 43rd International Conference on the Bioscience of Lipids - September 11-14, Graz, Austria, Chemistry and Physics of Lipids 118 (1-2), pp. 61 - 62.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Matushkin Y.G., Kolchanov N.A. (2002) Computer dynamic modeling of gene networks and the analysis of the action of mutations. // 10th International Conference on Intelligent Systems for Molecular Biology, Conference program, p. 107.

Ratushny A.V., Likhoshvai V.A., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Matushkin Y.G., Kolchanov N.A. (2002) Computer dynamic modeling of gene networks and the analysis of the action of mutations. // ISMB Satellite Meeting on Computer Modeling of Cellular Processes, special Interest Group for Biological simulation, Book of abstracts, p. 2.

Ananko E.A., Ignatieva E.V., Nedosekina E.A., Suslov V.V., Podkolodnaya O.A., Ratushny A. V., Stepanenko I.L., Kolchanov N.A. (2001) Gene Networks. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, p. 22.

Ananko E.A., Ignatieva E.V., Suslov V.V., Nedosekina E.A., Podkolodnaya O.A., Ratushny A. V., Stepanenko I.L., Kolchanov N.A. (2001) Classification of gene networks on the basis of the information from GeneNet database. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, p. 22.

Likhoshvai V.A., Matushkin Yu.G., Ratushny A.V., Ananko E.A., Ignatieva E.V. Podkolodnaya O.A. (2001) Gene network modeling by means of the generalized chemical kinetic method. The conference devoted to a 90-anniversary from Alexey Andreevich Ljapunov's birthday. The program and summaries of reports / Novosibirsk, Academgorodok, pp. 22.

Podkolodnaya N.N., Ratushny A.V. (2001) Modeling and visualization system of gene networks dynamics. Materials of XXXIX International Scientific Student's Conference "The Student and Scientific and Technical Progress": Information technologies / Novosibirsk State University, Novosibirsk, pp. 99-100.

Ananko E.A., Likhoshvai V.A., Kolpakov F.A., Podkolodny N.L., Ratushny A.V., Ignatieva E. V., Podkolodnaya O.A., Stepanenko I.L., Kolchanov N.A. (2000) GeneNet electronic library: the description and modeling of gene networks of animals and plants. Electronic libraries: perspective methods and technologies, electronic collections. The Proceedings of the Second All-Russian Scientific Conference, September 26-28, Protvino, Russia, pp. 66-72.

Ratushny A.V., Ignatieva E.V., Podkolodnaya O.A., Ananko E.A., Likhoshvai V.A. (2000) Mathematical modeling of genic networks dynamics. Modeling of Nonequilibrium Systems. Materials of III All-Russian Seminar, October 20-22, Krasnoyarsk, Russia, pp. 200-201.

Ratushny A.V. (2000) Mathematical model of erythroid cell differentiation regulation. Materials of XXXVIII International Scientific Student's Conference "The Student and scientific and Technical Progress": Biology / Novosibirsk State University, Novosibirsk, pp. 91-92.

 


Last modified: September 2012