Hierarchy For Package org.systemsbiology.chem

Package Hierarchies:

All Packages

Class Hierarchy

• class java.lang.Object
  • class org.systemsbiology.chem.Constants
  • class org.systemsbiology.chem.DelayedReactionSolver
  • class org.systemsbiology.chem.Model
  • class org.systemsbiology.chem.ModelBuilderCommandLanguage (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.IModelBuilder)
  • class org.systemsbiology.chem.ModelExporterCommandLanguage (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.IModelExporter)
  • class org.systemsbiology.chem.ModelExporterHumanReadable (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.IModelExporter)
  • class org.systemsbiology.chem.ModelExporterOrrellColumnFormat (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.IModelExporter)
  • class org.systemsbiology.chem.ReactionParticipant (implements java.lang.Comparable)
  • class org.systemsbiology.chem.ReactionParticipant.Type
  • class org.systemsbiology.math.ReservedSymbolMapper
    • class org.systemsbiology.chem.ReservedSymbolMapperChemCommandLanguage
  • class org.systemsbiology.chem.SimulationController
  • class org.systemsbiology.chem.SimulationProgressReporter
  • class org.systemsbiology.chem.SimulationResults
  • class org.systemsbiology.chem.Simulator
    • class org.systemsbiology.chem.SimulatorDeterministicBase
      • class org.systemsbiology.chem.SimulatorDeterministicRungeKuttaAdaptive (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
      • class org.systemsbiology.chem.SimulatorDeterministicRungeKuttaFixed (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
    • class org.systemsbiology.chem.SimulatorStochasticBase
      • class org.systemsbiology.chem.SimulatorStochasticGibsonBruck (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
      • class org.systemsbiology.chem.SimulatorStochasticGillespie (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
      • class org.systemsbiology.chem.SimulatorStochasticTauLeapBase
        • class org.systemsbiology.chem.SimulatorStochasticTauLeapComplex (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
        • class org.systemsbiology.chem.SimulatorStochasticTauLeapSimple (implements org.systemsbiology.util.IAliasableClass, org.systemsbiology.chem.ISimulator)
  • class org.systemsbiology.chem.SimulatorParameters
  • class org.systemsbiology.chem.SteadyStateAnalyzer
  • class org.systemsbiology.math.SymbolEvaluator (implements java.lang.Cloneable)
    • class org.systemsbiology.chem.SymbolEvaluatorChem
  • class org.systemsbiology.math.SymbolValue (implements java.lang.Comparable)
    • class org.systemsbiology.chem.Compartment
    • class org.systemsbiology.chem.Parameter
    • class org.systemsbiology.chem.Reaction
    • class org.systemsbiology.chem.Species
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Exception
      • class org.systemsbiology.chem.ModelExporterException
      • class org.systemsbiology.chem.ModelViewerException
      • class org.systemsbiology.chem.SimulationFailedException
  • class org.systemsbiology.chem.TimeSeriesOutputFormat
  • class org.systemsbiology.chem.TimeSeriesSymbolValuesReporter

Interface Hierarchy

• interface org.systemsbiology.chem.IModelBuilder
• interface org.systemsbiology.chem.IModelExporter
• interface org.systemsbiology.chem.IModelViewer
• interface org.systemsbiology.chem.ISimulator