org.systemsbiology.inference
Class SignificanceCalculationMethod

java.lang.Object
  org.systemsbiology.inference.SignificanceCalculationMethod

All Implemented Interfaces:

Comparable

public class SignificanceCalculationMethod

extends Object

implements Comparable

Enumerates the possible formulas for computing the significance of an observation, based on the distribution of "negative control" observations. Passed to the SignificanceCalculator as a parameter.

Author:

sramsey

Field Summary

static SignificanceCalculationMethod	CDF_NONPARAMETRIC
static SignificanceCalculationMethod	CDF_PARAMETRIC
static int	CODE_CDF_NONPARAMETRIC
static int	CODE_CDF_PARAMETRIC
static int	CODE_PDF_NONPARAMETRIC
static int	CODE_PDF_PARAMETRIC
static SignificanceCalculationMethod	PDF_NONPARAMETRIC
static SignificanceCalculationMethod	PDF_PARAMETRIC

Method Summary

int	compareTo(Object pObject)
static SignificanceCalculationMethod	get(String pName)
static SignificanceCalculationMethod[]	getAll()
int	getCode()
String	getName()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

CODE_CDF_NONPARAMETRIC

public static final int CODE_CDF_NONPARAMETRIC

See Also:

Constant Field Values

CODE_PDF_NONPARAMETRIC

public static final int CODE_PDF_NONPARAMETRIC

See Also:

Constant Field Values

CODE_CDF_PARAMETRIC

public static final int CODE_CDF_PARAMETRIC

See Also:

Constant Field Values

CODE_PDF_PARAMETRIC

public static final int CODE_PDF_PARAMETRIC

See Also:

Constant Field Values

CDF_NONPARAMETRIC

public static final SignificanceCalculationMethod CDF_NONPARAMETRIC

PDF_NONPARAMETRIC

public static final SignificanceCalculationMethod PDF_NONPARAMETRIC

PDF_PARAMETRIC

public static final SignificanceCalculationMethod PDF_PARAMETRIC

CDF_PARAMETRIC

public static final SignificanceCalculationMethod CDF_PARAMETRIC

Method Detail

getCode

public int getCode()

toString

public String toString()

compareTo

public int compareTo(Object pObject)

Specified by:

compareTo in interface Comparable

get

public static SignificanceCalculationMethod get(String pName)

getAll

public static SignificanceCalculationMethod[] getAll()

getName

public String getName()