Javadoc documentation for ISBJava classes.

See:
Description

Packages

org.systemsbiology.chem	This package contains classes used to simulate the kinetics of chemical reactions involving one or more chemical species.
org.systemsbiology.chem.app	This package contains classes for a graphical user interface (GUI) application front-end for the org.systemsbiology.chem chemical simulation package.
org.systemsbiology.chem.odetojava	This package contains classes used for solving the dynamics of models of kinetics models deterministically using ODEs.
org.systemsbiology.chem.sbml	This package contains classes used to for processing and models of biochemical kinetics written in the Systems Biology Markup Language (SBML).
org.systemsbiology.chem.sbw	This package contains classes used to provide an interface to the org.systemsbiology.chem package via the Systems Biology Workbench (SBW) system.
org.systemsbiology.data	Classes for manipulating data files and data structures.
org.systemsbiology.gui	Helper classes for implementing a graphical user interface (GUI) based on the Java Foundation Classes (JFC, or "Swing") application programming interface.
org.systemsbiology.inference	This package contains classes used to infer the set of elements affected by a perturbation of a biological system, based on multiple evidences.
org.systemsbiology.math	Classes for general-purpose numerical computing.
org.systemsbiology.math.probability	Classes representing probability distributions of different types.
org.systemsbiology.util	This package contains miscellaneous utility classes such as data containers and data-related exceptions.

Javadoc documentation for ISBJava classes.

ISBJava API Documentation CompBio Group, Institute for Systems Biology Version 2.4.4, Released 2006/09/28

ISBJava javadoc API documentation.

Please e-mail comments or corrections regarding this document to: isbjava NOSPAM at NOSPAM systemsbiology.org